A spatially resolved multi-omic atlas connecting gene expression, chromatin accessibility, regulatory motifs, and tissue context across Glycine max development.
Based on Zhang, Luo, Marand et al., 2024 Read the Cell paper
Move from cell-level patterns to genomic regions without losing biological context.
Search a gene or motif, compare cell types, and visualize expression or accessibility in UMAP and spatial coordinates.
Inspect genes, accessible chromatin regions, expression tracks, and enriched motifs at exact genomic locations.
Integrated assays reveal how cell identity, regulation, and tissue position work together.
Explore cell-resolved gene expression across soybean tissues and developmental stages.
How to explore →Discover accessible chromatin and enriched transcription factor binding motifs.
How to explore →Place gene expression back into its native tissue and developmental context.
How to explore →Start broad in the cell atlas, focus on candidate regulatory regions, then connect motif accessibility with transcription factor expression.
View the step-by-step example →Search your gene and identify the cells or tissue regions where it is active.
Use the Genome Browser to locate nearby accessible chromatin regions.
Compare enriched motifs with transcription factor expression and accessibility.
Zhang, Luo, Marand et al. · Cell · 2024